Development and performance comparison of MPI and Fortran Coarrays within an atmospheric research model

A mini-application of The Intermediate Complexity Research (ICAR) Model offers an opportunity to compare the costs and performance of the Message Passing Interface (MPI) versus coarray Fortran, two methods of communication across processes. The application requires repeated communication of halo regions, which is performed with either MPI or coarrays. The MPI communication is done using non-blocking two-sided communication, while the coarray library is implemented using a one-sided MPI or OpenSHMEM communication backend. We examine the development cost in addition to strong and weak scalability analysis to understand the performance costs

Production of compact plants by overexpression of AtSHI in the ornamental Kalanchoe

Growth retardation is an important breeding aim and an essential part of horticultural plant production Here, the potential of transferring the Arabidopsis short internode (shi) mutant phenotype was explored by expressing the AtSHI gene in the popular ornamental plant Kalanchoe A 35S-AtSHI construct was produced and transferred into eight genetically different cultivars of Kalanchoe by Agrobacterium tumefaciens The resulting transgenic plants showed dwarfing phenotypes like reduced plant height and diameter, and also more compact inflorescences, as a result of increased vegetative height The shi phenotype was stable over more than five vegetative subcultivations Compared with Arabidopsls, the ectopic expression of AtSHI in Kalanchoe showed several differences None of the Kalanchoe SHI-lines exhibited alterations in leaf colour or morphology, and most lines were not delayed in flowering Moreover, continuous treatment of lines delayed in flowering with low concentrations of gibberellins completely restored the time of flowering These features are very Important as a delay in flowering would increase plant production costs significantly. The effect of expression controlled by the native Arabidopsls SHI promoter was also investigated in transgenic Kalanchoe and resulted in plants with a longer flowering period Two AtSHI like genes were identified in Kalanchoe indicating a widespread presence of this transcription factor These findings are important because they suggest that transformation with the AtSHI gene could be applied to several species as a tool for growth retardation, and that this approach could substitute the use of conventional chemical growth regulation in plant productio

Fortran coarray implementation of semi-Lagrangian convected air particles within an atmospheric model

This work added semi-Lagrangian convected air particles to the Intermediate Complexity Atmospheric Research (ICAR) model. The ICAR model is a simplified atmospheric model using quasi-dynamical downscaling to gain performance over more traditional atmospheric models. The ICAR model uses Fortran coarrays to split the domain amongst images and handle the halo region communication of the image’s boundary regions. The newly implemented convected air particles use trilinear interpolation to compute initial properties from the Eulerian domain and calculate humidity and buoyancy forces as the model runs. This paper investigated the performance cost and scaling attributes of executing unsaturated and saturated air particles versus the original particle-less model. An in-depth analysis was done on the communication patterns and performance of the semi-Lagrangian air particles, as well as the performance cost of a variety of initial conditions such as wind speed and saturation mixing ratios. This study found that given a linear increase in the number of particles communicated, there is an initial decrease in performance, but that it then levels out, indicating that over the runtime of the model, there is an initial cost of particle communication, but that the computational benefits quickly offset it. The study provided insight into the number of processors required to amortize the additional computational cost of the air particles

Oxidation of cyclohexanol and cyclohexene with triazenido complexes of chromium immobilized in biosorption FAU supports

This work presents the recovery of biosorption supports as an alternative source of benign production of heterogeneous catalysts for oxidation reactions in mild conditions. Cr-containing FAU zeolite, in sodium form (NaY) and in proton form (HY), was recovered from biosorption studies and reused as support for the preparation of heterogeneous catalysts by the flexible ligand method, using 1,3-diphenyltriazene derivatives. Results showed that the ligand play an important role in the coordination of Cr inside the zeolite. The catalysts showed good activity for the oxidation of cyclohexanol, reaching a maximum of 63.5% conversion. Cr leaching was evaluated and it was found that the Cr-FAU supports lost some of the Cr into the reaction medium, whereas immobilization of Cr-complexes reduced the referred leaching. For the cyclohexene oxidation, a maximum 72.9% conversion was achieved with a HY zeolite-based catalyst.H. Figueiredo and B. Silva are thankful to the "FCT - Fundacao para a Ciencia e Tecnologia" for their respective research grants. IKB thanks FO' for the contract under the program Ciencia 2007. This work was partially funded by the Centre of Biological Engineering and the Centre of Chemistry (University of Minho, Portugal) through FCT strategic projects PEst-OE/EQB/LA0023/ 2013 and PEst-C/QUI/UI0686/2011 (nF-COMP-01-0124-FEDER022716), the Project "BioEnv - Biotechnology and Bioengineering for a sustainable world", REF. NORTE-07-0124-FEDER-000048, co-funded by the Programa Operacional Regional do Norte (ON.2 - 0 Novo Norte), QREN and FEDER, and by the Spanish Ministry of Science and Innovation (CTQ2008-04261/PPQ)